5mC interactions in PDB entry 6D1T auto-curated with SNAP

Last updated on 2019-09-30 by Xiang-Jun Lu <xiangjun@x3dna.org>. The block schematics were created with DSSR and rendered using PyMOL.

Summary information and primary citation [schematics · contacts · top · homepage · tutorial]

DNA binding protein-DNA
X-ray (2.25 Å)
Complex of mbd1-mbd and methylated DNA
List of 2 5mC-amino acid contacts:
  1. B.5CM6: stacking-with-A.ARG22 is-WC-paired is-in-duplex [+]:AcG/cGT
  2. C.5CM6: stacking-with-A.ARG44 is-WC-paired is-in-duplex [-]:cGT/AcG
direct SNAP output · DNAproDB 2.0
Liu, K., Xu, C., Tempel, W., Arrowsmith, C.H., Bountra, C., Edwards, A.M., Min, J., Structural Genomics Consortium: "Complex of MBD1-MBD and methylated DNA." to be published

Base-block schematics in six views [summary · contacts · top · homepage · tutorial]

List of 2 5mC-amino acid contacts [summary · schematics · top · homepage · tutorial]

No. 1 B.5CM6: download PDB file for the 5mC entry
stacking-with-A.ARG22 is-WC-paired is-in-duplex [+]:AcG/cGT
No. 2 C.5CM6: download PDB file for the 5mC entry
stacking-with-A.ARG44 is-WC-paired is-in-duplex [-]:cGT/AcG