5mC interactions in PDB entry 6C2F auto-curated with SNAP

Last updated on 2019-09-30 by Xiang-Jun Lu <xiangjun@x3dna.org>. The block schematics were created with DSSR and rendered using PyMOL.

Summary information and primary citation [schematics · contacts · top · homepage · tutorial]

DNA binding protein-DNA
X-ray (2.65 Å)
Mbd2 in complex with methylated DNA
List of 6 5mC-amino acid contacts:
  1. B.5CM6: stacking-with-A.ARG188 is-WC-paired is-in-duplex [+]:CcG/CGG
  2. E.5CM6: stacking-with-D.ARG188 is-WC-paired is-in-duplex [+]:CcG/CGG
  3. H.5CM6: stacking-with-G.ARG188 is-WC-paired is-in-duplex [+]:CcG/CGG
  4. K.5CM6: stacking-with-J.ARG188 is-WC-paired is-in-duplex [+]:CcG/CGG
  5. N.5CM6: stacking-with-M.ARG188 is-WC-paired is-in-duplex [+]:CcG/CGG
  6. Q.5CM6: stacking-with-P.ARG188 is-WC-paired is-in-duplex [+]:CcG/CGG
direct SNAP output · DNAproDB 2.0
Liu, K., Xu, C., Tempel, W., Arrowsmith, C.H., Bountra, C., Edwards, A.M., Min, J., Structural Genomics Consortium: "MBD2 in complex with methylated DNA." to be published

Base-block schematics in six views [summary · contacts · top · homepage · tutorial]

List of 6 5mC-amino acid contacts [summary · schematics · top · homepage · tutorial]

No. 1 B.5CM6: download PDB file for the 5mC entry
stacking-with-A.ARG188 is-WC-paired is-in-duplex [+]:CcG/CGG
No. 2 E.5CM6: download PDB file for the 5mC entry
stacking-with-D.ARG188 is-WC-paired is-in-duplex [+]:CcG/CGG
No. 3 H.5CM6: download PDB file for the 5mC entry
stacking-with-G.ARG188 is-WC-paired is-in-duplex [+]:CcG/CGG
No. 4 K.5CM6: download PDB file for the 5mC entry
stacking-with-J.ARG188 is-WC-paired is-in-duplex [+]:CcG/CGG
No. 5 N.5CM6: download PDB file for the 5mC entry
stacking-with-M.ARG188 is-WC-paired is-in-duplex [+]:CcG/CGG
No. 6 Q.5CM6: download PDB file for the 5mC entry
stacking-with-P.ARG188 is-WC-paired is-in-duplex [+]:CcG/CGG