5mC interactions in PDB entry 4GJP auto-curated with SNAP

Last updated on 2019-09-30 by Xiang-Jun Lu <xiangjun@x3dna.org>. The block schematics were created with DSSR and rendered using PyMOL.

Summary information and primary citation [schematics · contacts · top · homepage · tutorial]

X-ray (1.94 Å)
Crystal structure of the tal effector dhax3 bound to dsDNA containing repetitive methyl-cpg
List of 4 5mC-amino acid contacts:
  1. I.5CM6: stacking-with-A.ASN505 is-WC-paired is-in-duplex [+]:TcG/CGA
  2. I.5CM8: stacking-with-A.ASN573 is-WC-paired is-in-duplex [+]:GcG/CGC
  3. G.5CM6: stacking-with-B.ASN505 is-WC-paired is-in-duplex [+]:TcG/CGA
  4. G.5CM8: stacking-with-B.ASN573 is-WC-paired is-in-duplex [+]:GcG/CGC
direct SNAP output · DNAproDB 2.0
Yan, N., Deng, D., Yan, C.Y., Yin, P., Pan, X.J., Shi, Y.G.: "Crystal structure of a protein complex." To be Published

Base-block schematics in six views [summary · contacts · top · homepage · tutorial]

List of 4 5mC-amino acid contacts [summary · schematics · top · homepage · tutorial]

No. 1 I.5CM6: download PDB file for the 5mC entry
stacking-with-A.ASN505 is-WC-paired is-in-duplex [+]:TcG/CGA
No. 2 I.5CM8: download PDB file for the 5mC entry
stacking-with-A.ASN573 is-WC-paired is-in-duplex [+]:GcG/CGC
No. 3 G.5CM6: download PDB file for the 5mC entry
stacking-with-B.ASN505 is-WC-paired is-in-duplex [+]:TcG/CGA
No. 4 G.5CM8: download PDB file for the 5mC entry
stacking-with-B.ASN573 is-WC-paired is-in-duplex [+]:GcG/CGC